+86-0755 2308 4243
Tom Modification Master
Tom Modification Master
Mastering the art of peptide modification. Developing functional peptides tailored to specific research needs.

Popular Blog Posts

  • What are the challenges in developing drugs based on Xenin 25?
  • Are there any peptide APIs with antiviral properties?
  • What are the differences between RVG29 and other similar substances?
  • What is the solubility of RVG29 - Cys?
  • Can I get a refund if the DAMGO I bought is defective?
  • What are the interactions between catalogue peptides and cytokines?

Contact Us

  • Room 309, Meihua Building, Taiwan Industrial Park, No.2132 Songbai Road, Bao'an District, Shenzhen, China
  • sales@biorunstar.com
  • +86-0755 2308 4243

How are peptide APIs synthesized?

Jun 23, 2025

Peptide active pharmaceutical ingredients (APIs) have gained significant attention in the pharmaceutical industry due to their high specificity, low toxicity, and potential for treating a wide range of diseases. As a leading peptide APIs supplier, we are committed to providing high - quality peptide products through advanced synthesis methods. In this blog, we will delve into the various ways peptide APIs are synthesized.

Solid - Phase Peptide Synthesis (SPPS)

Solid - phase peptide synthesis is one of the most widely used methods for synthesizing peptide APIs. This approach was pioneered by Robert Bruce Merrifield in 1963, which revolutionized peptide synthesis and earned him the Nobel Prize in Chemistry in 1984.

The basic principle of SPPS involves attaching the C - terminus of the first amino acid to an insoluble solid support, such as a resin. This resin provides a stable platform for subsequent chemical reactions. The amino group of the attached amino acid is protected with a suitable protecting group, typically Fmoc (9 - fluorenylmethyloxycarbonyl) or Boc (tert - butyloxycarbonyl).

Once the first amino acid is attached to the resin, the protecting group on its amino group is removed, exposing the reactive amino group. The next amino acid, also with its amino group protected, is then coupled to the free amino group of the previously attached amino acid using a coupling reagent. Commonly used coupling reagents include DIC (N,N' - diisopropylcarbodiimide), HBTU (O - benzotriazole - N,N,N',N' - tetramethyl - uronium - hexafluoro - phosphate), and HATU (O - (7 - azabenzotriazol - 1 - yl) - N,N,N',N' - tetramethyluronium hexafluorophosphate).

Palmitoyl-Glu(OSu)-OtBuC20(OtBu)-Glu(OtBu)

After each coupling step, unreacted amino groups are capped to prevent the formation of deletion sequences. This is usually done using acetic anhydride. The cycle of deprotection, coupling, and capping is repeated for each amino acid in the desired peptide sequence.

Once the entire peptide sequence has been assembled on the resin, the peptide is cleaved from the resin using a cleavage cocktail. This cocktail also removes any side - chain protecting groups that were present on the amino acids during the synthesis. The cleaved peptide is then purified by methods such as high - performance liquid chromatography (HPLC).

Solution - Phase Peptide Synthesis

Solution - phase peptide synthesis is an older method but still has its advantages in certain situations. In this method, all reactions take place in solution, and the peptide is not attached to a solid support.

The synthesis starts with the protection of the amino and carboxyl groups of the individual amino acids. Similar to SPPS, protecting groups like Fmoc or Boc are used for the amino group, and ester groups are used to protect the carboxyl group.

The first step is the coupling of two protected amino acids to form a dipeptide. This is achieved using a coupling reagent, similar to the ones used in SPPS. After the formation of the dipeptide, the protecting groups on one end of the dipeptide are removed, and it is then coupled with another protected amino acid or dipeptide to form a longer peptide.

The process is repeated step - by - step until the desired peptide sequence is obtained. One of the challenges of solution - phase synthesis is the purification of the intermediate peptides at each step, as the reaction mixture contains various by - products and unreacted starting materials. Purification is typically carried out by extraction, crystallization, or chromatography.

Chemical Ligation

Chemical ligation is a powerful method for synthesizing large peptides or proteins that are difficult to assemble using traditional SPPS or solution - phase synthesis. One of the most well - known chemical ligation methods is native chemical ligation (NCL).

In NCL, a peptide with a C - terminal thioester reacts with another peptide with an N - terminal cysteine residue. The reaction occurs under mild aqueous conditions and results in the formation of a native peptide bond between the two peptides.

The process involves first synthesizing two or more peptide segments using SPPS or solution - phase synthesis. One segment is prepared with a C - terminal thioester, and the other with an N - terminal cysteine. These segments are then mixed in a suitable buffer, and the ligation reaction takes place. After ligation, if necessary, the cysteine residue can be further modified or used as a handle for additional chemical reactions.

Convergent Synthesis

Convergent synthesis is a strategy that combines the advantages of both SPPS and chemical ligation. Instead of synthesizing the entire peptide sequence in a linear fashion, the peptide is divided into smaller segments, which are synthesized separately using SPPS.

These segments are then ligated together using chemical ligation methods. This approach reduces the number of coupling steps required for the synthesis of large peptides, which can improve the overall yield and purity of the final product. For example, a long peptide can be divided into three or four segments, each containing 10 - 20 amino acids. These segments are synthesized on the resin, cleaved, and then ligated in a convergent manner.

Examples of Our Peptide APIs

We offer a wide range of peptide APIs, including C20 - OtBu - Glu(OtBu) - AEEA - AEEA - OH, C20(OtBu) - Glu(OtBu), and Palmitoyl - Glu(OSu) - OtBu. These peptides are synthesized using the advanced methods described above, ensuring high purity and quality.

Quality Control in Peptide API Synthesis

Quality control is of utmost importance in the synthesis of peptide APIs. We have a comprehensive quality control system in place to ensure that our products meet the highest standards.

After synthesis, the peptide is analyzed by various techniques, including HPLC, mass spectrometry (MS), and nuclear magnetic resonance (NMR). HPLC is used to determine the purity of the peptide, while MS is used to confirm the molecular weight of the peptide. NMR can provide information about the structure and conformation of the peptide.

We also conduct stability studies to ensure that the peptide APIs remain stable under different storage conditions. This includes testing the peptide at different temperatures, pH values, and in the presence of various excipients.

Conclusion

The synthesis of peptide APIs is a complex and multi - step process that requires advanced techniques and strict quality control. As a peptide APIs supplier, we are constantly exploring new methods and technologies to improve the efficiency and quality of our synthesis. Whether it is through solid - phase peptide synthesis, solution - phase synthesis, chemical ligation, or convergent synthesis, we are committed to providing our customers with high - quality peptide products.

If you are interested in purchasing our peptide APIs or have any questions about peptide synthesis, please feel free to contact us for procurement discussions. We look forward to working with you to meet your peptide API needs.

References

  1. Fields, G. B., & Noble, R. L. (1990). Solid - phase peptide synthesis utilizing 9 - fluorenylmethoxycarbonyl amino acids. International Journal of Peptide and Protein Research, 35(2), 161 - 214.
  2. Dawson, P. E., Muir, T. W., Clark - Lewis, I., & Kent, S. B. H. (1994). Synthesis of proteins by native chemical ligation. Science, 266(5186), 776 - 779.
  3. Chan, W. C., & White, P. D. (2000). Fmoc solid phase peptide synthesis: a practical approach. Oxford University Press.
Send Inquiry